Numbat systems

As a MOOSE app, Numbat provides access to all objects in the MOOSE framework. The following is a complete list of all available objects.

Adaptivityinput

Adaptivity/Indicatorsinput

Adaptivity/Markersinput

  • AddElementalFieldAction
  • AddMarkerAction
  • BoxMarkerMarks the region inside and outside of a 'box' domain for refinement or coarsening.
  • ComboMarkerA marker that converts many markers into a single marker by considering the maximum value of the listed markers (i.e., refinement takes precedent).
  • ErrorFractionMarkerMarks elements for refinement or coarsening based on the fraction of the min/max error from the supplied indicator.
  • ErrorToleranceMarkerCoarsen or refine elements based on an absolute tolerance allowed from the supplied indicator.
  • OrientedBoxMarkerMarks inside and outside a box that can have arbitrary orientation and center point.
  • UniformMarkerUniformly mark all elements for refinement or coarsening.
  • ValueRangeMarkerMark elements for adaptivity based on the supplied upper and lower bounds and the specified variable.
  • ValueThresholdMarkerThe the refinement state based on a threshold value compared to the specified variable.

AuxKernelsinput

AuxScalarKernelsinput

AuxVariablesinput

BCsinput

  • NumbatDiffusionDGBCDirichlet boundary condition for use with NumbatDiffusionDG
  • NumbatPerturbationBCDirichlet boundary condition that includes a random perturbation
  • AddBCAction
  • ConvectiveFluxBCDetermines boundary values via the initial and final values, flux, and exposure duration
  • DGFunctionDiffusionDirichletBC
  • DiffusionFluxBCComputes a boundary residual contribution consistent with the Diffusion Kernel. Does not impose a boundary condition; instead computes the boundary contribution corresponding to the current value of grad(u) and accumulates it in the residual vector.
  • DirichletBCImposes the essential boundary condition , where is a constant, controllable value.
  • EigenDirichletBCDirichlet BC for eigenvalue solvers
  • FunctionDirichletBCImposes the essential boundary condition , where is a (possibly) time and space-dependent MOOSE Function.
  • FunctionNeumannBCImposes the integrated boundary condition , where is a (possibly) time and space-dependent MOOSE Function.
  • FunctionPenaltyDirichletBC
  • FunctionPresetBCThe same as FunctionDirichletBC except the value is applied before the solve begins
  • LagrangeVecDirichletBCImposes the essential boundary condition , where are constant, controllable values.
  • LagrangeVecFunctionDirichletBCImposes the essential boundary condition , where components are calculated with functions.
  • MatchedValueBCImplements a NodalBC which equates two different Variables' values on a specified boundary.
  • NeumannBCImposes the integrated boundary condition , where is a constant, controllable value.
  • OneDEqualValueConstraintBC
  • PenaltyDirichletBCEnforces a Dirichlet boundary condition in a weak sense by penalizing differences between the current solution and the Dirichlet data.
  • PostprocessorDirichletBC
  • PostprocessorNeumannBC
  • PresetBCSimilar to DirichletBC except the value is applied before the solve begins
  • SinDirichletBCImposes a time-varying essential boundary condition , where varies from an given initial value at time to a given final value over a specified duration.
  • SinNeumannBCImposes a time-varying flux boundary condition , where varies from an given initial value at time to a given final value over a specified duration.
  • VacuumBC
  • VectorNeumannBCImposes the integrated boundary condition , where is a user-defined, constant vector.
  • WeakGradientBCComputes a boundary residual contribution consistent with the Diffusion Kernel. Does not impose a boundary condition; instead computes the boundary contribution corresponding to the current value of grad(u) and accumulates it in the residual vector.
  • Periodic

BCs/Periodicinput

Constraintsinput

Controlsinput

DGKernelsinput

Dampersinput

Debuginput

Debug/MaterialDerivativeTestinput

DeprecatedBlockinput

DiracKernelsinput

Distributionsinput

Executionerinput

Executioner/Adaptivityinput

Executioner/Predictorinput

Executioner/Quadratureinput

Executioner/TimeIntegratorinput

Executioner/TimeStepperinput

Functionsinput

GlobalParamsinput

ICsinput

InterfaceKernelsinput

Kernelsinput

  • NumbatConvectionConvection of concentration with velocity given by Darcy's law
  • NumbatConvectionSFConvection of concentration with velocity given by Darcy's law using the streamfunction formulation
  • NumbatDarcyDarcy's law
  • NumbatDarcySFDarcy's law for the streamfunction formulation
  • NumbatDiffusionDiffusion kernel with porosity
  • NumbatDiffusionSFDiffusion kernel for the streamfunction formulation
  • NumbatTimeDerivativeTime derivative kernel
  • AddKernelAction
  • AnisotropicDiffusionAnisotropic diffusion kernel with weak form given by .
  • BodyForceDemonstrates the multiple ways that scalar values can be introduced into kernels, e.g. (controllable) constants, functions, and postprocessors. Implements the weak form .
  • CoefTimeDerivativeThe time derivative operator with the weak form of .
  • ConservativeAdvectionConservative form of which in its weak form is given by: .
  • CoupledForceImplements a source term proportional to the value of a coupled variable. Weak form: .
  • CoupledTimeDerivativeTime derivative Kernel that acts on a coupled variable. Weak form: .
  • DiffusionThe Laplacian operator (), with the weak form of .
  • MassEigenKernelAn eigenkernel with weak form where is the eigenvalue.
  • MassLumpedTimeDerivativeLumped formulation of the time derivative . Its corresponding weak form is where denotes the time derivative of the solution coefficient associated with node .
  • MaterialDerivativeRankFourTestKernelClass used for testing derivatives of a rank four tensor material property.
  • MaterialDerivativeRankTwoTestKernelClass used for testing derivatives of a rank two tensor material property.
  • MaterialDerivativeTestKernelClass used for testing derivatives of a scalar material property.
  • NullKernelKernel that sets a zero residual.
  • ReactionImplements a simple consuming reaction term with weak form .
  • TimeDerivativeThe time derivative operator with the weak form of .
  • UserForcingFunctionDemonstrates the multiple ways that scalar values can be introduced into kernels, e.g. (controllable) constants, functions, and postprocessors. Implements the weak form .
  • VectorBodyForceDemonstrates the multiple ways that scalar values can be introduced into kernels, e.g. (controllable) constants, functions, and postprocessors. Implements the weak form .
  • VectorDiffusionThe Laplacian operator (), with the weak form of .

Materialsinput

Meshinput

  • NumbatBiasedMeshGenerates a regular orthogonal mesh with a bias of specified initial resolution at a specified edge
  • CreateDisplacedProblemAction
  • SetupMeshAction
  • SetupMeshCompleteAction
  • AnnularMeshFor rmin>0: creates an annular mesh of QUAD4 elements. For rmin=0: creates a disc mesh of QUAD4 and TRI3 elements. Boundary sidesets are created at rmax and rmin, and given these names. If tmin!0 and tmax!2Pi, a sector of an annulus or disc is created. In this case boundary sidesets are also created a tmin and tmax, and given these names
  • ConcentricCircleMeshThis ConcentricCircleMesh source code is to generate concentric circle meshes.
  • DistributedGeneratedMeshCreate a line, square, or cube mesh with uniformly spaced or biased elements.
  • FileMeshRead a mesh from a file.
  • GeneratedMeshCreate a line, square, or cube mesh with uniformly spaced or biased elements.
  • ImageMeshGenerated mesh with the aspect ratio of a given image stack.
  • PatternedMeshCreates a 2D mesh from a specified set of unique 'tiles' meshes and a two-dimensional pattern.
  • StitchedMeshReads in all of the given meshes and stitches them all together into one mesh.
  • TiledMeshUse the supplied mesh and create a tiled grid by repeating this mesh in the x,y, and z directions.
  • MortarInterfaces
  • Partitioner

Mesh/MortarInterfacesinput

Mesh/Partitionerinput

MeshModifiersinput

  • AddMeshModifierAction
  • AddAllSideSetsByNormals
  • AddExtraNodeset
  • AddSideSetsFromBoundingBoxFind sidesets with given boundary ids in bounding box and add new boundary id. This can be done by finding all required boundary and adding the new boundary id to those sidesets. Alternatively, a number of boundary ids can be provided and all nodes within the bounding box that have all the required boundary ids will have a newboundary id added.
  • AssignElementSubdomainID
  • AssignSubdomainID
  • BlockDeleterMesh modifier which removes elements with the specified subdomain ID
  • BoundingBoxNodeSetAssigns all of the nodes either inside or outside of a bounding box to a new nodeset.
  • BreakBoundaryOnSubdomainBreak boundaries based on the subdomains to which their sides are attached. Naming convention for the new boundaries will be the old boundary name plus "_to_" plus the subdomain name
  • BreakMeshByBlockBreak boundaries based on the subdomains to which their sides are attached. Naming convention for the new boundaries will be the old boundary name plus "_to_" plus the subdomain name. At the momentthis only works on REPLICATED mesh
  • ImageSubdomainSamples an image at the coordinates of each element centroid using the resulting value as each element's subdomain ID
  • LowerDBlockFromSidesetAdds lower dimensional elements on the specified sidesets.
  • MeshExtruderTakes a 1D or 2D mesh and extrudes the entire structure along the specified axis increasing the dimensionality of the mesh.
  • MeshSideSetAdd lower dimensional elements along the faces contained in a side set to set up mixed dimensional problems
  • OrientedSubdomainBoundingBox
  • ParsedAddSidesetA MeshModifier that adds element's sides to a sideset if the centroid satisfies the combinatorial_geometry expression, (and optionally) if one of the side's elements is in included_subdomain_ids and if it features the correct normal.
  • ParsedSubdomainMeshModifierMeshModifier that uses a parsed expression (combinatorial_geometry) to determine if an element (aka its centroid) is inside the combinatorial geometry and assigns a new block id.
  • RenameBlockRenameBlock re-numbers or re-names an old_block_id or old_block_name with a new_block_id or new_block_name. If using RenameBlock to merge blocks (by giving them the same name, for instance) it is advisable to specify all your blocks in old_blocks to avoid inconsistencies
  • SideSetsAroundSubdomainAdds element faces that are on the exterior of the given block to the sidesets specified
  • SideSetsBetweenSubdomains
  • SideSetsFromNormalsAdds a new named sideset to the mesh for all faces matching the specified normal.
  • SideSetsFromPointsAdds a new sideset starting at the specified point containing all connected element faces with the same normal.
  • SubdomainBoundingBoxChanges the subdomain ID of elements either (XOR) inside or outside the specified box to the specified ID.
  • TransformApplies a linear transform to the entire mesh.

MultiAppsinput

NodalKernelsinput

NodalNormalsinput

Numbatinput

Numbat/Dimensionalinput

  • NumbatActionAction to automatically add all variables, kernels, boundary conditions and postprocessors for the dimensional formulation

Numbat/Dimensionlessinput

  • NumbatSFActionAction to automatically add all variables, kernels, boundary conditions and postprocessors for the dimensionless formulation

Numbat/EffectivePermeabilityinput

Outputsinput

Postprocessorsinput

Preconditioninginput

Probleminput

Samplersinput

ScalarKernelsinput

Transfersinput

UserObjectsinput

Variablesinput

VectorPostprocessorsinput